Fine structure of amide I BAND OF Fourier ir spectrum of collagen
Keywords:
collagen, resonance interactions, dipole-dipole approximation, Fourier IR spectroscopy, Amide I
Abstract
The frequency shifts of the carbonyl vibrations induced by resonance interactions of the carbonyl vibrations for collagen structures (Gly-Pro-Hyp)2-Gly-Phe-Hyp-Gly-Glu-Arg-(Gly-Pro-Hyp)3 and (Pro-Hyp Gly-)3-Ile-Thr-Gly-Ala-Arg-Gly-Leu-Ala-Gly-(Pro-Hyp-Gly)4 have been treated on the basis of molecular exciton theory in a dipole-dipole approximation. Spectral parameters and assignments of elementary components of the fine structure of Amide I Band of Fourier IR spectrum of natural collagen were obtained.
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References
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28. Frank S. Parker. Applications of infrared, Raman, and resonance Raman spectroscopy in biochemistry. -New York: Plenum press. - 1983. - 550 p.
29. Chien J.C.W. Solid-state characterization of the structure and property of collagen.
II J. Macromol Sci Rev Macrob Chem. 1972. V. 1. pp. 49-104.
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31. Brauner J.W., Flach C.R., Mendelsohn R.A. Quantitative reconstruction of the Amide 1 contour in the 1R spectra of globular proteins: from structure to spectrum. II J. Am. Chem. Soc. 2005. V. 127. pp. 100-109.
2. Гришковский Б.А., Хромова Т.Б., Гречишко В.С., Лазарев Ю.А. Формирование гидратной структуры тройной спирали коллагенового типа при гидратации. //Молекулярная биология. 1991. Т. 25, вып. І с. 77-82.
3. Berisio R., Vitagliano L., Mazzarella L., Zagari A. Crystal structure of the collagen triple helix model [(PRO-PRO-GLY)10]3. //Protein Sci. 2002. V. ll. pp. 262-270.
4. Lazarev Yu. A. Chishkovsky B. A., Chromova T. B. Amid I band of IR spectrum and structure of collagen and related polypeptides. //Biopolymers, 1985. V.24. N.7. pp. 1449-1478.
5. Nevskaya N.A., Chirgadze Yu.N. Infrared spectra and resonance interactions of Amide I and II vibrations of a-helix. //Biopolymers. 1976. V. 15. pp. 636-648.
6. Nevskaya N.A., Chirgadze Yu.N. Infrared spectra and resonance interactions of Amide I vibration of the parallel-chain pleated sheet. //Biopolymers. 1976. V. 15. pp. 627-636.
7. Krimm S., Bandakar J. Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins. //Adv. Protein Chem. 1986. V. 38. pp.. 181-364.
8. Мележик Р. П., Семенов М.А. Резонансные взаимодействия карбонильных колебаний в коллагеновых структурах. Е. П. //Біофізичний вісник. 2003. №606. Вип.2 (13). с. 62-68.
9. Воронец Д., Козич Д. Влажный воздух: термодинамические свойства и применение. - М.: Энерго-атомиздат, 1984. - 136 с.
10. Ivanov A.Yu., Plokhotnichenko A.M., Radchenko E.D., Sheina G.G. and Blagoi Yu.P. FTIR spectroscopy of uracil derivatives isolated in Kr, Ar and Ne matrices: matrix effect and Fermi resonance. 11 J. Mol. Struct. 1995. V. 372. pp. 91-100
11. Ivanov A.Yu., Metelkina M.K., Onyshchenko V.V., Blagoi Yu.P. The FTIR spectra and structures of Poly(rA)* Poly(rU)- Mg2' complexes at different temperatures in D2() solutions. //Бioфізичний вісник № 637. Вип. 1-2(14). c. 16-23.
12. Kramer R.Z., Bella J., Mayville P., Brodsky B., Berman H.M. Sequence dependent conformational varia¬tions of collagen triple-helical structure. //Nature Structural Biology. 1999.
V. 6. N. 5. pp. 454-457.
13. Emsley J., Knight C.G., Farndale R.W., Barnes M.J., Liddington R.C. Structural basis of collagen recogni¬tion by integrin a2bl //Cell. 2000. V. 100. pp. 47-56.
14. Элиот А. Инфракрасные спектры и структура полимеров. - М.: Мир, 1972.
15. Miyazawa T.J. Perturbation treatment of the characteristic vibrations of polypeptide chains in various con-figurations II J. Chem. Phys. 1960. V.32. pp. 1647-1652.
16. Чиргадзе Ю.Н. Инфракрасная спектроскопия полимеров и белков. //Итоги науки и техники. Молеку¬лярная биология. Т.1. Москва 1973.
17. Krimm S and Abe Y. Intermodular interaction effects in the Amide I vibrations of β polypeptides. //Proc. Nat. Acad. Sci. The USA. 1972. V.69. N.10. pp. 2788-2792.
18. Чиргадзе Ю.Н., Невская Н.А. Резонансные взаимодействия основных амидных колебаний в упорядо¬ченных пептидных структурах. //Докл. АН СССР. 1973. Т.208. №2. с. 447-450.
19. Давыдов А.С. Теория поглощения света в молекулярных кристаллах. - Киев, изд-во АН УССР, 1951.
20. Семенов М.А., Больбух Т.В. Резонансные взаимодействия карбонильных колебаний в спиральных полипептидах. Препринт № 190, изд-во ИРЭ АН УССР, Харьков, 1982, с. 28.
21. Грибов Л.А. Теория инфракрасных спектров полимеров. - М.: Наука, 1977.
22. Semenov M.A., Bereznyak E.G. Hydration and stability of nucleic acids in the condensed state. //Comments Mol. Cel. Biophys, 2000. V.10. N. l. pp. 1 -23.
23. Eraser R.D.B., Suzuki E. Resolution of overlapping bands: functions for simulating band shapes //Anal.Chem. 1969. V. 1. pp. 37-41.
24. Химмельблау Д. Прикладное нелинейное программирование. - М.: Мир, 1975. - 534 с.
25. Semenov M.A., Starikov E.B. On infrared spectroscopic analysis of transfer RNA secondary structure //Studia biophysica. 1987. V. 120. N. 2. pp. 187-196
26. Veis A. Brownell A.G. Triple-helix formation on ribosome-bound nascent chains of procollagen: Deute¬rium-hydrogen exchange studies. //Proc. Natl. Acad. Sci. The USA. 1977. V. 74. N. 3. pp. 902-905.
27. Chirgadze Y.N., Fedorov O.V., Trushina N.P. Estimation of amino acid residue side-chain absorption in the infrared spectra of protein solutions in heavy water //Biopolymers. 1975. V. 14. pp. 679-694.
28. Frank S. Parker. Applications of infrared, Raman, and resonance Raman spectroscopy in biochemistry. -New York: Plenum press. - 1983. - 550 p.
29. Chien J.C.W. Solid-state characterization of the structure and property of collagen.
II J. Macromol Sci Rev Macrob Chem. 1972. V. 1. pp. 49-104.
30. Heimburg T., Esmann M., Marsh D. Characterization of the secondary structure and assembly of the trans-membrane domains of trypsinized Na, K-ATPase by Fourier transform infrared spectroscopy. //The Journal of Biological Chemistry. 1997. V. 272. N. 41. pp. 25685-25692.
31. Brauner J.W., Flach C.R., Mendelsohn R.A. Quantitative reconstruction of the Amide 1 contour in the 1R spectra of globular proteins: from structure to spectrum. II J. Am. Chem. Soc. 2005. V. 127. pp. 100-109.
Published
2005-06-06
Cited
How to Cite
Melezhyk, O., M.O. Semenov, M., & Ivanov, A. (2005). Fine structure of amide I BAND OF Fourier ir spectrum of collagen. Biophysical Bulletin, 1(15), 35-42. Retrieved from https://periodicals.karazin.ua/biophysvisnyk/article/view/18001
Section
Molecular biophysics
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