EXPERIMENTAL AND THEORETICAL STUDY OF INTERMOLECULAR INTERACTIONS IN THE RECOGNITION COMPLEX OF METHYLURACILE AND ACRYLAMIDE
Keywords:
mass spectrometry
Abstract
Structural and energetical parameters of the intermolecular interactions in the model recognition complex between the 1-methyluracyl and side chains of the ammoacids Asparagyine and GIutamine were determined. Enthalpy value of the complex formation, measured by the method of temperature dependent field ionization mass spec-trometry is equal to (-40,6±4,2) kJ/mole and it is in a good agreement with the values of interaction energy in two most favourable dimer configurations, calculated by MP2 and DFT methods.
Downloads
Download data is not yet available.
References
1. Methods in Enzymology. Protein-DNA interactions. San Diego. Academic Press. 1998. V 208. p. 528.
2. G.G.Kneale. Methods in Molecular Biology. DNA-protein interaction. Ed.Totowa, NJ. The Humana Press. 1994. 148 p.
3. Saenger W., Jeffrey J. Hydrogen bonding in biological structures. Berlin. Springer. 1991.347p.
4. Веркин Б. И., Янсон И. К., Суходуб Л. Ф., Теплицкий А.Б. Взаимодействия биомолекул. Новые экспериментальные подходы и методы. Киев. Наукова Думка. 1985. 164 с.
5. Теплицкий А.Б., Галетич И.К., Суходуб Л.Ф. // Молекулярная биология. 1990.Т.35, N 5. с. 709- 710.
6: Poltev V.I., Shulyupina N.V., Bruskov V.I. et al. // Journal of Biomolecular Structure and Dynamics. 1991. V. 9, N1. P. 101-111.
7. Галетич И.К., Шелковский B.C., Косевич M.B., Благой Ю.П. // Сборник «Проблемы биологии и медицины». Харьков-Полтава. 1998. с. 75-88.
8. Sukhodub L.F. // Chem. Rev. 1987. V. 87, N3. P. 589-606.
9. Щелковский B.C. // Дис. Канд. физ. - мат.наук. 1985. Харьков. 172 с.
10. Король Э.Н., Лобанов В.В., Назаренко В.А., Покровский В.А. Физические основы полевой масс-спектрометрии. Киев. Наукова Думка. 1978. 195с.
11. Sukhodub L.F., Shelkovsky V.S., Wierzchowski K.L. //Biophys Chem.1984.V.19. P.191-200
12. Binkley J.S., Pople J.A. // Int. J. Quantum Chem. 1975. V.9. P.229.
13. Pople J.A., Binkley J.S., Seeger R. // Int. J. Quantum Chem. Quantum Chem. Symp. 1976. V.10, P.1
14. Becke A.D. // Phys. Rev. В 1988. V 38. P.3098.
15. Lee С, Yang W., Parr R.G. // Phys. Rev. В 1988. V.37. P.785.
16. Vosko S.H., Wilk L., Nusair M. // Can. J. Phys. 1980. V.58. P.553.
17. Frish M.J., Trucks G.W., Schlegel H.B. et. al. Gaussian 94, Revision E.2; Gaussian Inc. Pittsburgh. PA. 1994.
18. Смолянинова Т. И., Брусков В.И., Кашпарова E. B. // Молекулярная биология. 1985. Т. 19. N 4. с. 992-1000.
19. Helene С., Lancelot G. // Prog. Biophys. Molec. Biol. 1982. 39. P.1- 68.
20. Anderson J.E., Ptashne M., Harrison S.C.// Nature.- 1987.- V.326.- P. 846-852.
2. G.G.Kneale. Methods in Molecular Biology. DNA-protein interaction. Ed.Totowa, NJ. The Humana Press. 1994. 148 p.
3. Saenger W., Jeffrey J. Hydrogen bonding in biological structures. Berlin. Springer. 1991.347p.
4. Веркин Б. И., Янсон И. К., Суходуб Л. Ф., Теплицкий А.Б. Взаимодействия биомолекул. Новые экспериментальные подходы и методы. Киев. Наукова Думка. 1985. 164 с.
5. Теплицкий А.Б., Галетич И.К., Суходуб Л.Ф. // Молекулярная биология. 1990.Т.35, N 5. с. 709- 710.
6: Poltev V.I., Shulyupina N.V., Bruskov V.I. et al. // Journal of Biomolecular Structure and Dynamics. 1991. V. 9, N1. P. 101-111.
7. Галетич И.К., Шелковский B.C., Косевич M.B., Благой Ю.П. // Сборник «Проблемы биологии и медицины». Харьков-Полтава. 1998. с. 75-88.
8. Sukhodub L.F. // Chem. Rev. 1987. V. 87, N3. P. 589-606.
9. Щелковский B.C. // Дис. Канд. физ. - мат.наук. 1985. Харьков. 172 с.
10. Король Э.Н., Лобанов В.В., Назаренко В.А., Покровский В.А. Физические основы полевой масс-спектрометрии. Киев. Наукова Думка. 1978. 195с.
11. Sukhodub L.F., Shelkovsky V.S., Wierzchowski K.L. //Biophys Chem.1984.V.19. P.191-200
12. Binkley J.S., Pople J.A. // Int. J. Quantum Chem. 1975. V.9. P.229.
13. Pople J.A., Binkley J.S., Seeger R. // Int. J. Quantum Chem. Quantum Chem. Symp. 1976. V.10, P.1
14. Becke A.D. // Phys. Rev. В 1988. V 38. P.3098.
15. Lee С, Yang W., Parr R.G. // Phys. Rev. В 1988. V.37. P.785.
16. Vosko S.H., Wilk L., Nusair M. // Can. J. Phys. 1980. V.58. P.553.
17. Frish M.J., Trucks G.W., Schlegel H.B. et. al. Gaussian 94, Revision E.2; Gaussian Inc. Pittsburgh. PA. 1994.
18. Смолянинова Т. И., Брусков В.И., Кашпарова E. B. // Молекулярная биология. 1985. Т. 19. N 4. с. 992-1000.
19. Helene С., Lancelot G. // Prog. Biophys. Molec. Biol. 1982. 39. P.1- 68.
20. Anderson J.E., Ptashne M., Harrison S.C.// Nature.- 1987.- V.326.- P. 846-852.
Cited
How to Cite
GaletichI. К., Stepanian, S. G., Shelkovsky, V. S., Kosevich, M. V., Blagoi, Y. P., & Adamovich, L. (1). EXPERIMENTAL AND THEORETICAL STUDY OF INTERMOLECULAR INTERACTIONS IN THE RECOGNITION COMPLEX OF METHYLURACILE AND ACRYLAMIDE. Biophysical Bulletin, 1(1). Retrieved from https://periodicals.karazin.ua/biophysvisnyk/article/view/1918
Section
Molecular biophysics
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).
