Stretching vibrations of carbonyl groups in raman spectra of collagen and poly(Gly-Pro-Pro): calcullation and experiment
Keywords:
poly(Gly-Pro-Pro), collagen, Raman spectra, dynamic resonance interactions, stretching carbonyl vibrations, Amide I
Abstract
Raman spectra of poly(Gly-Pro-Pro) and type I collagen in deuterium oxide solution were obtained. Frequencies of type A stretching carbonyl vibrations were calculated according to the model of weakly connected oscillators within the limits of theory of perturbations for polypeptide structures taking into consideration the dynamic resonance interactions of transition dipoles. The calculated frequencies agree with the experimental frequencies of the Amide I band in Raman spectra of poly(Gly-Pro-Pro) and type I collagen.
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References
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Eliot A. Infrakrasnye spektry i struktura polimerov. M.:Mir; 1972. (in Russian)
Miyazawa TJ. Pertubation treatment of the characteristic vibrations of polypeptide chains in various configurations. J. Chem. Phys. 1960;32:1647-52.
Chirgadze YuN, Nevskaya NA. Infrared Spectra and resonance interactions of Amide-I vibration of the antiparallel-chain pleated sheet. Biopolymers. 1976;15:607-25.
Chirgadze YaN, Nevskay NA. Infarared spectra and resonance interactions of Amide-I vibration of the parallel-chain pleated sheet. Biopolymers. 1976;15:627-36.
Nevskaya NA. Chirgadze YuN. Infrared spectra and resonance interactions of Amide-l and II vibrations a-helix. Biopolymers. 1976;15:637-48.
Moore WH, Krimm S. Vibrational analysis of peptides, polypeptides and proteins. I. Polyglycine I. Biopolymers. 1976;15:2439-64.
Moore WH, Krimm S. Vibrational analysis of peptides, polypeptides and proteins. II. β-Poly(L-alanine) and β-Poly (L-alanilglycine). Biopolymers. 1976;15:2465-83.
Melezhik EP,Semenov MA. Rezonansnye vzaimodeistviia karbonilnykh kolebanii v kollagenovykh strukturakh. Biofizicheskii vestnik. 2003;606(13):62-8. (in Russian)
Melezhik EP, Semenov MA, Ivanov AIu. Issledovanie tonkoi struktury polos Amid I IK-Fure spektra kollagena. Biofizicheskii vestnik. 2005;665(15):35-42. (in Russian)
Kramer RZ, Bella J, Mayville P, Brodsky B, Berman HM. Sequence dependent conformational variations of collagen triple-helical structure. Nature Structural Biology. 1999;6(5):454-7.
Emsley J, Knight CG, Farndale RW, Barmes MJ, Liddington RC. Structural basis of collagen recognition by integrin a2b1. Cell. 2000;100:47-56.
Parker FS. Application of Infrared, Raman and resonance Raman spectroscopy in biochemistry. New York: Plemun Press; 1983. 550p.
Lazarev YA, Grishkovsky BA, Khromova TB, Lazareva AV, Grechishko VS. Bound water in the collagen-like triple-helical structure. Biopolymers. 1992;32(2):189-95.
Published
2005-06-06
Cited
How to Cite
Boryskina, O. P., Bolbukh, T. V., & Semenov, M. A. (2005). Stretching vibrations of carbonyl groups in raman spectra of collagen and poly(Gly-Pro-Pro): calcullation and experiment. Biophysical Bulletin, 2(16), 5-9. Retrieved from https://periodicals.karazin.ua/biophysvisnyk/article/view/13285
Section
Molecular biophysics
Copyright (c) 2005 Biophysical visnik
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