Carbonyl vibration resonance interactions in collagen structures

  • Y. P. Melezhik Institute for Radiophysics and Electronics of NAS of Ukraine
  • M. A. Semenov Institute for Radiophysics and Electronics of NAS of Ukraine
Keywords: collagen, triple helix, resonance interactions, dipole-dipole approximation, perturbation theory, energy of stabilization, IR spectroscopy

Abstract

Resonance interaction of the carbonyl vibrations for model collagen structure [(PRO-PRO-GLY)10]3 have been treated on the basis of molecular exciton theory in a dipole-dipole approximation. The frequency shifts of the carbonyl vibrations induced by dipole coupling, inter-peptide and peptide-water hydrogen bond formation were obtained. The relative contributions of energies of peptide-water and inter-peptide hydrogen bonds and energies of other types of interaction to the total stabilization energy were estimated for the model collagen structures.

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Author Biographies

Y. P. Melezhik, Institute for Radiophysics and Electronics of NAS of Ukraine

12, Acad. Proskura str., Kharkov, 61085

M. A. Semenov, Institute for Radiophysics and Electronics of NAS of Ukraine

12, Acad. Proskura str., Kharkov, 61085

References

Chirgadze IuN. Inrakrasnaia spektroskopiia polimerov i belkov. Itogi nauki i tekhniki. Molekuliarnaia biologiia. Moskva. 1973. (in Russian)

Eliot A. Infrakrasnye spektry i struktura polimerov. M.:Mir; 1972. (in Russian)

Lazarev YuA, Chishkovsky BA, Chromova TB. Amid I band of IR spectrum and structure of collagen and related polypeptides. Biopolymers. 1985;24(7):1449-78.

Yonath A, Traub W. Polymers of as collagen models IV. Structure analysis of poly (L-proly-glycy-L-prolyne). J. Molecular Biol. 1969;43(3):461-77.

Okuyuma K, Arnott S. Crystal and molecular structure of a collagen-like polypeptide (pro-pro-gly)10. J. Mol. Biol. 1981;152(2):427-43.

Lazarev IuA. Strukturoobrazovanie spirali kollagenovogo tipa v sinteticheskikh oligo- i politripeptidakh. Dis. dok. fiz.-mat. Nauk, Moskva, MGU, 1987.

Miyazawa TJ. Pertubation treatment of the characteristic vibrations of polypeptide chains in various configuraytions. J. Chem. Phys. 1960;32:1647-52.

Krimm S, Abe Y. Intermolecular interaction effects in the Amide I vibrations of B polypeptides. Proc. Nat. Acad. Sci. USA. 1972;69(10):2788-92.

Chirgadze IuN, Nevskaia NA. Rezonansnye vzaimodeistviia osnovnykh amidnykh kolebanii v uporiadochennykh peptidnykh strukturakh. Dokl. AN SSSR. 1973;208(2):447-50.

Fukushima K, Jdeguchi Y, Miyazawa T. The normal vibrations of polyglycine I. Bull. Chem. Soc. Japan. 1963;36:1301-7.

Semenov MA, Bolbuch TV. Carbonyl vibration resonance interactions helical polynucleotides Poly(dA)-Poly(dT) and PolyG-PolyC. Studia biophysica. 1984;102(3):215-20.

Semenov MA, Bereznyak EG. Hydration and stability of nucleic acids in the condenced state. Comments Mol. Cel. Biophys. 2000;10(1):1-23.

Davydov AS. Teoriia pogloshcheniia sveta v molekuliarnykh kristallakh. Kiev: AN USSR; 1951.

Semenov MA, Bolbukh TV. Rezonansnye vzaimodeistviia karbonilnykh kolebanii v spiralnykh polipeptidakh. Kharkov; 1982. p.28.

Berisio R, Vitagliano L, Mazzarella L, Zagari A. rystal structure of the collagen triple helix model [(PRO-PRO-GLY)10)3. Protein Sci.2002;11:262-70.

Gribov LA. Teoriia infrakrasnykh spektrov polimerov. M.:Nauka; 1977. (in Russian)

Basharov MA, Volkenshtein MV, Golovanov IB, Lazarev IuN, Sobolev VM. Nπ-sviazi v amidakh i peptidakh. Dokl. AN SSSR. 1986;287:211-5. (in Russian)

Semenov MA. Gidratatciia i strukturnoe sostoianie nukleinovykh kislot v kondensirovannom sostoianii. Dis. dok. fiz.-mat. nauk. Moskva:MGU. 1990. (in Russian)

Gasan AL, Maleev VYa, Semenov MA. Role of water in stabilizing the helical biomacromolecules DNA and collagen. Studia. Biophysica. 1990;136(2-3):171-8.

Engle J, Chen H-T, Prockop DJ. The triple helix-coil conversion of collagen-like polytripeptides in aqueous and nonagueous solvents. Comparison of the thermodynamic parameters and the binding of water to (L-Pro-L-Pro-Gly)n and (L-Pro-L-Hyp-Gly)n. Biopolymers. 1977;16:601-22.
Published
2018-06-25
Cited
How to Cite
Melezhik, Y. P., & Semenov, M. A. (2018). Carbonyl vibration resonance interactions in collagen structures. Biophysical Bulletin, 2(13), 62-67. Retrieved from https://periodicals.karazin.ua/biophysvisnyk/article/view/12411