Algae in the database of world collections of living cultures WDCM CCINFO
Keywords:
algae, cultivation, databases, WDCM CCINFO
Abstract
There was analyzed how algae are presented in world collections of living cultures according to CCINFO database. The shortcomings of CCINFO database were revealed: empty, false and duplicate records, not all collections presented in the consolidated directory. The current 6th version of the database contains 2307 species of algae (about 5% of the known natural diversity) and 142 intraspecific taxa, living cultures of which are supported in 12 collections; 293 cultures are not identified to species. More than half of the cultures in the world's largest collections are unique and not duplicated in the other collections. Taxonomic diversity of algae is reflected unevenly in the culture: Diatoms, Brown, Red and Dinophyta algae are poorly represented; Green algae are represented in the culture best. It is proposed to consider the autecology data when isolating algae into the culture to expand and upgrade the funds of the collections.
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References
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Chepurnov V.A., Mann D.G., Sabbe K., Vyverman W. Experimental studies on sexual reproduction in diatoms // International review of cytology. – 2004. – Vol.237. – P. 91–154.
Clay B., Kugrens P. Systematics of the enigmatic kathablepharids, including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera comb. nov // Protist. – 1999. – Vol.150, №1. – P. 43–59.
Cock J.M., Coelho S.M. Algal models in plant biology // Journal of Experimental Botany. – 2011. – Vol.62, №8. – P. 2425–2430.
Dawyndt P., Vancanneyt M., De Meyer H., Swings J. Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources // IEEE Transactions on Knowledge and Data Engineering. – 2005. – Vol.17, №8. – P. 1111–1126.
Ellegaard M., Godhe A., Härnström K., McQuoid M. The species concept in a marine diatom: LSU rDNA–based phylogenetic differentiation in Skeletonema marinoi/dohrnii (Bacillariophyceae) is not reflected in morphology // Phycologia. – 2008. – Vol.47, №2. – P. 156–167.
Gorbulin O.S. Ecological and biological characteristics of the green flagellates (Phytomonadina) of the continental waters of Ukraine // The Journal of V.N.Karazin Kharkov National University. Series “Biology”. 2012. – №1035. – Iss.16. – P. 63–76.
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Guiry M.D., Guiry G.M. AlgaeBase. World-wide electronic publication. – National University of Ireland, Galway, 2015. (http://www.algaebase.org)
Hohmann-Marriott M.F., Blankenship R.E. Evolution of photosynthesis // Annual review of plant biology. – 2011. – Vol.62. – P. 515–548.
KEGG. Kyoto Encyclopedia of Genes and Genomes (www.genome.jp/kegg/)
NCBI. National Centre for Biotechnology Information (www.ncbi.nlm.nih.gov)
NCBI Taxonomy database (http://www.ncbi.nlm.nih.gov/taxonomy)
Sekimoto H., Sone Y., Fujii T. Biochemical, physiological, and molecular analysis of sexual isolation in the species complex Closterium peracerosum-strigosum-littorale (Chlorophyta) // Journal of Phycology. – 1995. – Vol.31, №4. – P. 611–615.
Starr R.C., Zeikus J.A. UTEX – the culture collection of algae at the University of Texas at Austin 1993 list of cultures // Journal of Phycology. – 1993. – Vol.29, №s2. – P. 1–106.
Sun Q., Liu L., Wu, L. et al. Web resources for microbial data // Genomics, proteomics & bioinformatics. – 2015. – Vol.13, №1. – P. 69–72.
Vasilenko A., Ozerskaya S., Stupar O. Current WFCC CC catalogues as a starting ground for networking efforts // WFCC Newsletter. – 2011. – №50. – P. 5–15.
WDCM CCINFO. World Data Centre for Microorganisms, Culture Collections Information Worldwide. – 2014. (http://www.wfcc.info/ccinfo/)
Wijffels R.H., Kruse O., Hellingwerf K.J. Potential of industrial biotechnology with cyanobacteria and eukaryotic microalgae // Current Opinion in Biotechnology. – 2013. – Vol.24, №3. – P. 405–413.
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How to Cite
Комариста, В. П., Горбулін, О. С., & Догадіна, Т. В. (1). Algae in the database of world collections of living cultures WDCM CCINFO. The Journal of V.N.Karazin Kharkiv National University. Series «Biology», 25, 57-63. Retrieved from https://periodicals.karazin.ua/biology/article/view/5516
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BOTANY AND PLANT ECOLOGY
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