The 2nd Scientific workshop for students “Computational physics of DNA”
Abstract
The article is devoted to the 2nd Scientific workshop for students “Computational physics of DNA”.
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References
Bogolyubov Institute for Theoretical Physics. Sergiy Perepelytsya "Molecular dynamics: from the problem of hard spheres to the DNA macromolecule" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/_F0zRspVZEA?feature=shared
Bogolyubov Institute for Theoretical Physics. Francesca Mocci "Force fields and molecular dynamics simulations: Applications to nucleic acids" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/L16GBc8Pa48?feature=shared
Bogolyubov Institute for Theoretical Physics. Sergey Volkov "Conformational mechanics of DNA" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/T70o7JYlE2s?si=YgwABVkZQxgusaMe
Bogolyubov Institute for Theoretical Physics. Anna Shestopalova "Computational methods of structural bioinformatics in studies of the indirect mechanism of protein-nucleic recognition" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/_Hx0Ju0JlwE?si=7pp35Lx6mYFNw7Rg
Bogolyubov Institute for Theoretical Physics. Anna Shestopalova "Сomputer simulations of DNA-ligand intercalation complexes: some special features" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/9XNVgkQjHCw?si=QlEvsy1fFrz6DuYX
Bogolyubov Institute for Theoretical Physics. Oleksii Zdorevskyi "Hybrid quantum-mechanics/molecular mechanics (QM/MM) simulation methods and their applications to studying charge transfer processes in redox proteins" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/-8W9uTPJu8U?si=IF_AYx_fwb_j-ubQ
Bogolyubov Institute for Theoretical Physics. Tudor Vasiliu "Using ChatGpt in molecular dynamics simulations: Applications to nucleic acids" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/0szW_eLOyDU?si=B9Isyxj8KGNSKYbU
Bogolyubov Institute for Theoretical Physics. Kęstutis Aidas "Modelling NMR properties of complex molecular materials ..." [video on the Internet]. 2024 May 26. Available from: https://youtu.be/VfYs8zzbRR8?si=wKByN_STNOsSRSZi
Bogolyubov Institute for Theoretical Physics. Tetiana Bubon: Specific effects of alkali metal ions on the vibrational dynamics of DNA ion-hydration [video on the Internet]. 2024 May 26. Available from: https://youtu.be/ktS__VNjtXM?si=JX696Tb3jDJM3Hbe
Bogolyubov Institute for Theoretical Physics. Tetiana Bubon: "Practical Lesson 1: Getting started with GROMACS and VMD program packages" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/Kx8LvsipRQs?si=bDC6THIy8XAtNWle
Bogolyubov Institute for Theoretical Physics. Tetiana Bubon "Practical Lesson 2: MD simulations of the DNA double helix with GROMACS" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/GmqJZqdVA9E?si=5tXP9mcw56aBo4g6
Bogolyubov Institute for Theoretical Physics. Tetiana Bubon "Practical Lesson 3: Analyzing MD trajectories of DNA using GROMACS and VMD" [video on the Internet]. 2024 May 26. Available from: https://youtu.be/YZb0hmgmCFY?si=USm--arrWuk954h4
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