How to obtain the nucleotide sequences DNA from gene bank data base

Authors

  • D. R. Duplij Institute of Molecular Biology and Genetics image/svg+xml Author
  • V. V. Kalashnikov Simon Kuznets Kharkiv National University of Economics image/svg+xml Author
  • N. A. Chashyn Institute of Molecular Biology and Genetics image/svg+xml Author

Keywords:

NCBI, contig, mRNA, CDS, nucleotide sequences, introns, exons

Abstract

A method of extraction nucleotide sequences of human mRNA from Gene Bank flat format of NCBI was proposed. The method is based on using regular expressions PERL language on the basis of Extended Backus–Naur Forms (EBNF). Suggested for work set of regular expressions could be used for the analysis of other genomes' sequences that are presented in Gene Bank flat format (gbk).

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Author Biographies

  • D. R. Duplij, Institute of Molecular Biology and Genetics

    150 Ac. Zabolotny Str., 03143 Kiev, Ukraine, duplijd@gmail.com

  • V. V. Kalashnikov, Simon Kuznets Kharkiv National University of Economics

    9А Lenina Street, 61077 Kharkiv, Ukraine,

    hw@ksue.edu.ua

  • N. A. Chashyn, Institute of Molecular Biology and Genetics

    150 Ac. Zabolotny Str., 03143 Kiev, Ukraine, duplijd@gmail.com

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Issue

Vol. 1 No. 24 (2010): Біофізичний вісник

Section

Methods of biophysical investigations

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How to Cite

How to obtain the nucleotide sequences DNA from gene bank data base. (2010). Biophysical Bulletin, 1(24). https://periodicals.karazin.ua/biophysvisnyk/article/view/4026

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