Molecular mechanisms of influence of slow electrons on biological structures

Keywords: nucleic acids, nucleobases, low energy electrons, mass spectrometry, spectroscopy

Abstract

Background: The article reviews investigations carried out by biophysicists of the Transcarpathian Branch of the Ukrainian Biophysical Society, dedicated to the memory of the prominent Ukrainian biophysicist, Professor Yuri Pavlovich Blagoi.

Objectives: Study of the peculiarities of physical processes and structural changes in nucleic acid molecules initiated by low-energy electrons (10-1-102 eV).

Materials and methods: Molecular components of nucleic acids – nucleobases, nucleosides – were chosen as objects of research. A complex of methods is applied: the spectral method for obtaining the luminescence spectra of molecules excited by an electron impact; the electric method in determining the complete cross-sections of the formation of positive and negative ions; the method of gas-phase mass spectrometry with electron impact ionization. A new approach is proposed, which is based on the development of the methods for obtaining biomolecules in an isolated (gas) state, the formation of molecular beams, and the implementation of a crossed electron and molecular beams method.

Results: The processes of excitation, ionization and fragmentation of molecules of nucleic acid bases under electron impact are investigated. The radiation spectra of biomolecules in the wavelength region from 200 nm to 500 nm for different energies of incident electrons are obtained. For identification of spectral bands, the excitation functions of biomolecules are investigated, mass spectrometry analysis of the bases is performed, semi-empirical quantum-chemical calculations of structural parameters are carried out. It is established that the complex superpositional nature of the spectra reflects the simultaneous occurrence of various physical processes, including, in addition to the direct excitation of the singlet and triplet states of the base molecules, the dissociation excitation and excitation of ionized biomolecules and their fragments. The analysis of the excitation functions shows the presence of intersystem transitions with the formation of triplet metastable states of the nucleic acid bases molecules. It is shown that the processes of the appearance of negative ions are of resonant nature and are accompanied by the dissociation of molecules even at energies smaller than the thresholds for excitation and ionization.

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Author Biographies

M. I. Sukhoviya, Uzhhorod National University

3 Narodna Sq., 88000, Uzhgorod, Ukraine

S. E. Birdus, Uzhgorod National University

3 Narodna Sq., 88000, Uzhgorod, Ukraine

M. I. Shafranyosh, Uzhgorod National University

3 Narodna Sq., 88000, Uzhgorod, Ukraine

Yu. Yu. Svida, Uzhgorod National University

3 Narodna Sq., 88000, Uzhgorod, Ukraine

I. I. Shafranyosh, Uzhgorod National University

3 Narodna Sq., 88000, Uzhgorod, Ukraine

References

Sukhoviya, M.I., Shafranyosh, I.I. (1980). Excitation of the nucleic acids bases by low-energy electrons. In Mechanisms of radiation damage and restoration of nucleic acids (p. 51). Pushchino-on-Oka. (in Russian).

Sukhoviya, M.I., Shafranyosh, I.I. (1982). Peculiarities of the excited states formation of nucleic acid base molecules under slow electrons and laser radiation. Abstracts of Papers. I Biophys. Congress. Moscow, August 3-8, 1982. (Vol.4. p.76). (in Russian).

Sukhoviya, M.I. (1974). Dynamics of changes in the secondary luminescence of peripheral blood leukocytes after x-ray irradiation. Radiobiology, 14(3), 441-443. (in Russian).

Sukhoviya, M.I., Kovalchuk, A.V., Trifonov, E.N. (1975). Effect of ionizing electromagnetic radiation on DNA in solution and on white blood cells. Reports of the USSR Academy of Sciences, 225 (3), 1202-1205. (in Russian).

Sukhoviya, M.I., Slavik, V.N., Shafranyosh, I.I., Shimon, L.L. (1991). Peculiarity of the interaction of nucleic acid base molecules with of low energies electrons. Biopolymers and Cell, 7(6), 77-82. (in Ukrainian)

Sukhoviya, M.I., Voshchepinec, E.I., Shafranyosh, I.I., Shimon, L.L. (1996). Excitation and ionization of adenine by electron impact. Biopolymers and Cell, 12(3), 97-100. (in Ukrainian)

Sukhoviya, M.I., Shafranyosh, M.І., Shafranyosh, I.I. (1999). Spectral investigation of the electron-impact excitation of the nucleic acid base molecules. In Spectroscopy of Biological Molecules: New Directions (pp. 281-282). Kluwer Аcademic Publishers (Dordrecht / Boston/ London).

Shafranyosh, I.I., Sukhoviya, M.I. (2007). Excitation of thymine molecules in the gas phase by electron impact. Optics and spectroscopy, 102(4), 553-555. (in Russian).

Shafranyosh, I.I., Stecovich, V.V., Chavarga, M.M., Sukhoviya, M.I. (2012). Excitation of luminescence of uracil molecules by electron impact. Optics and spectroscopy, 112(1), 39-43. (in Russian).

Svyda, Ju.Ju., Shafranyosh, M.I., Sukhoviya, M.I., Chavarga, M.M., Shafranyosh, I.I. (2016). Luminescence of guanine molecules in the gas phase under the electron beam. Scientific Herald of Uzhhorod University. Series Physics, (39), 106-110. (in Ukrainian)

Shafranyosh, I.I., Mitropolskij, I.E., Kuzma, V.V., Svyda, Ju.Ju., Sukhoviya, M.I. (2018). Luminescence of uracil on the surface of ceramics under electron excitation. Journal of Applied Spectroscopy, 85(1), 38-43. (in Russian).

Volkova, S.E., Nebesny, F.I., Slavik, V.N., Sukhoviya, M.I., Chavarga, M.M., Shafranyosh, I.I., Shimon, L.L. (1989). Mass spectrometry studies of nucleic acid bases. Abstracts of Papers. Conf. on the application of mass spectrometry in biology and medicine. Kharkov, 1989. (pp.109-110). (in Russian).

Sukhoviya, M.I., Shafranyosh, I.I., Shimon, L.L. (1999). Investigation of the excitation and ionization of nucleic acid bases by electron impact. Bulletin of Kharkiv University, №434, Biophysical bulletin, 3(1), 39-41. (in Russian).

Shafranyosh, I.I., Sukhoviya, M.I., Shafranyosh, M.I. (2006). Absolute cross sections of positive and negative ions production in electron collision with cytosine molecules. J. Phys. B: At. Mol. Opt. Phys., (39), 4155-4162.

Shafranyosh, I.I., Petrushko I.A., Slavik, V.N., Sukhoviya, M.I. (2000) .Structural changes of nucleic acid bases caused by low-energy electrons. Scientific Herald of Uzhhorod University. Series Physics, (6), 259-263. (in Ukrainian)

Sukhoviya, M.I. (2001). Physical processes in biomacromolecules caused by electron impact and their biophysical role. Bulletin of Kharkiv University, №525, Biophysical bulletin, 1(8), 34-36. (in Ukrainian)

Sukhoviya, M.I., Shimon, L.L., Shafranyosh, M.I., Margitych, M.O., Shafranyosh, I.I., (2006). Experimental determination of cross sections formation of the cytosine molecule positive ions and its fragments by slow electrons. Bulletin of Kharkiv University № 716, Biophysical bulletin, 2(16), 19-24. (in Ukrainian)

Sukhoviya, M.I., Medulych, V.V., Shafranyosh, I.I. (2007). Ionization of uracil molecules by electron impact. Scientific Herald of Uzhhorod University. Series Physics, (20), 46-49. (in Ukrainian)

Shafranyosh I.I., Sukhoviya, M.I., Shafranyosh, M.I., Shimon L.L. (2008). Formation of positive and negative ions of thymine molecules under the action of slow electrons. Technical Physics, 53(12), 1536-1540.

Shvab, R.L., Shafranyosh, M.I., Stecovich, V.V., Sukhoviya, M.I., Shafranyosh, I.I. (2009). Formation of positive and negative ions of adenine molecules caused by slow electrons. Scientific Herald of Uzhhorod University. Series Physics, (25), 195-201. (in Ukrainian)

Shvab, R.L., Mynda, V.V., Stecovich, V.V., Stukalov, O.M., Sukhoviya, M.I., Shafranyosh, I.I. (2010). Experimental and quantum-chemical modeling of formation processes of positive and negative adenine ions by electron impact. Scientific Herald of Cherkasy University. Series Chemistry, (175), 54-57. (in Ukrainian)

Stecovich, V.V., Pavluchok-Gogerchak, O.V., Sukhoviya, M.I., Shvab, R.L., Shafranyosh, I.I. (2010). About radiobiological significance of slow electrons. Scientific Herald of Uzhhorod University. Series Biology, (27), 198-201. (in Ukrainian)

Shafranyosh, I.I. and Sukhoviya, M.I. (2012). Inelastic collisions of the uracil molecules with electrons. J. Chem. Phys., 137(18), 184303-1-184303-6.

Sukhoviya, M.I., Shafranyosh M.I., Chavarga M.M., Shafranyosh I.I. (2012). Electron impact ionization and excitation of uracil molecules. Ukr. J. Phys., 57(7), 752-760.

Shafranyosh, M.I., Zhygan, A.V., Svyda, Ju.Ju., Sukhoviya, M.I., Shafranyosh, I.I., Minaev, B.F., Baryshnikov, G.V., Minaeva, V.A. (2014). Ionization of guanine molecules in collisions with electrons. Scientific Herald of Uzhhorod University. Series Physics, (36), 137-143. (in Ukrainian)

Shafranyosh, I.I., Svyda, Ju.Ju., Sukhoviya, M.I., Shafranyosh, M.I., Minaev, B.F., Baryshnikov, G.V., Minaeva, V.A. (2015). Absolute effective cross sections of ionization of adenine and guanine molecules by electron impact. Technical Physics, 85(10), 16-22. (in Russian)

Sukhoviya, M.I., Shafranyosh, M.I.,. Margitich, M.O., Shafranyosh, I.I. (2005). Negative ions formation of the cytosine molecule by electron impact. Biopolym. Cell., 21(6), 531-535.

Shafranyosh, M.I., Sukhoviya, M.I., Shimon, L.L., Shafranyosh, I.I. (2005). Absolute cross sections for the electron-impact formation of cytosine anions. Tech. Phys. Let. 31(12), 1071-1073.

Shafranyosh, M.I., Sukhoviya, M.I., Shimon, L.L., Shafranyosh, I.I. (2008). Resonance formation of negative ions of uracil molecules. Scientific Herald of Uzhhorod University. Series Physics, (23), 85-90. (in Ukrainian)

Minaev, B.F., Shafranyosh, M.I., Svyda, Ju.Ju., Sukhoviya, M.I., Shafranyosh, I.I., Minaev, B.F., Baryshnikov, G.V., Minaeva, V.A. (2014). Fragmentation of the adenine and guanine molecules induced by electron collisions. J. Chem. Phys., 140, 175101-1–175101-15.

Aflatooni, K., Scheer, A.M., Burrow, P.D. (2006). Total dissociative electron attachment cross sections for molecular constituents of DNA. J. Chem. Phys., 125, 054301-1 – 054501-5.

Huber, D., Beikircher, S., Denifl, M., Zappa, F., Matejcik, S., Märk, T.D. and Scheier, P. (2006). High resolution dissociative electron attachment to gas phase adenine. J. Chem. Phys. 125, 084304-1 – 084304-7.

Van der Burgt, P.M., Finnegan, S. and Eden, S. (2015). Electron impact fragmentation of adenine: partial ionization cross sections for positive fragments. Eur. Phys. J. D. 69, 173-181.

Citations

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Published
2019-06-06
Cited
How to Cite
Sukhoviya, M. I., Birdus, S. E., Shafranyosh, M. I., Svida, Y. Y., & Shafranyosh, I. I. (2019). Molecular mechanisms of influence of slow electrons on biological structures. Biophysical Bulletin, (42), 68-74. https://doi.org/10.26565/2075-3810-2019-42-06
Section
Molecular biophysics