Actinocin derivative interaction with DNA molecules at different concentrations of monovalent alkaline metals ions Na+ and K+

  • Е. А. Minakova Institute of Radiophysics and Electronics of NAS of Ukraine
  • Е. B. Kruglova Institute of Radiophysics and Electronics of NAS of Ukraine
Keywords: spectrophotometry, native thymus DNA, actinocin derivative, ionic forces, complexation parameters

Abstract

Spectrophotometric titration method is used to study the actinomycin derivative ActII*, an analog of the
actinomycin D, interaction with calf thymus DNA. Models of several types of complexes forming between
ligand and polynucleotide matrix are considered. DALSMOD optimization program of spectrophotometric
concentration dependencies are used to choose the optimal complexation model. The results of the calculation are evidence of the three different spectral types of complexes in the system Act II* -DNA. Na+and K+ions are considered as competitors of the ligand by one of the binding sites. Logarithms of binding constants of each type of complexes depend linearly on the logarithm of NaCl and KCl concentrations in the considered interval. The slopes of these dependencies are different for Na+and K+ions.

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Author Biographies

Е. А. Minakova, Institute of Radiophysics and Electronics of NAS of Ukraine

Ak. Proskuri str., 12, Kharkov , 61085

Е. B. Kruglova, Institute of Radiophysics and Electronics of NAS of Ukraine

Ak. Proskuri str., 12, Kharkov , 61085

References

1. Korolev N., Lyubartsev A. P. et. al. // Biophys. J., Vol. 77, 1999, P. 2736-2749.

2. Denisov V.P. and Halle B. // Proc. Natl. Acad. Sci. USA., Vol. 97, 2000, P. 629-633.

3. Zinchenko A.A. and Kenichi Yoshikawa // Biophys. J., Vol.88, 2005, P. 4116-4123.

4. Ross P.D., Scruggs R.L. // Biopolymers, Vol. 2, 1964, P. 79-89.

5. Strauss U.P., Helfgott C., Pink H. // J.Phys.Chem.,Vol. 71, 1967, P. 2550-2556.

6. Hanlon S. et. al. // Biochemistry, Vol. 14, 1975, P. 1648-1660.

7. Anderson P., Bauer W.// Biochemistry, Vol. 17, 1978, P. 594-601.

8. Bleam M.L., Anderson C.F., Record M.T. // Proc.Natl.Acad.Sci USA, Vol. 77, 1980, P.3085-3089.

9. Kuznetsov I.A. et al // Reactive Polymers, Vol. 3, 1984, P. 37.

10. Круглова Е.Б. и др. // Біофизичний вісник. 1(10), 2002, с. 12-20.

11. Karapetian A.T. et. al. // J. Biomol. Struct. Dyn. Vol. 8. № 1, 1990, P. 123-130.

12. Tuite E., Norden B. // J. Am. Chem. Soc., Vol. 116, 1994, P. 7548-7556.

13. Kubota Y. // Bull. Chem. Soc. Japan., vol. 46, 1973, P. 2630-2633.

14. Sovenhasy K.M. // Nucleic Acids Research, Vol. 31, 2003, P. 2561-2569.

15. Scatchard G.// Ann. N.Y. Acad. Sci., Vol. 51, 1949, P. 660-672.

16. McGhee J.D., von Hippel P.H. // J. Mol. Biol., Vol. 86, 1974, P. 469-489.

17. Нечипуренко Ю.Д. // Мол. Биология, 18, 1984, c.1066-1080.

18. Anticancer Drug Desing. // By eds. Veselkov A.N., Davies D.B.: SEVNTU PRESS. 2002. 259 p.

19. Tereshko et. al. // Nucleic Acids Research, Vol.29, 2001, P. 1208-1215.

20. Varnai P., Zakrzewska K. // Nucleic Acids Research, Vol. 32, 2004, P. 4269–4280.

21. Cheng Yu., Korolev N. and Nordenskiold L. //Nucleic Acids Research, Vol. 34, 2006, P. 686-696.

22. Кривцова М.А., Морошкина Е.Б. и др. // Мол.Биология, 16(1), 1982, с.149-155.

23. Muller W., Crothers D.M.// Eur.J.Biochem, V.54, 1975, P. 267-277.

24. Круглова Е.Б. // Біофизичний вісник. 1(8), 2001, c. 27 - 41.

25. Нечипуренко Ю.Д., Гурский Г.В. // Биофизика 48, 2003, c. 773-796.

26. Solution equlibria. Hartley F., Burgess C., Alcock R. // Ellis Horwood. 1980. 360 p.

27. Круглова Е.Б. и др. // Биофизика 50 (2), 2005, c. 243-254.

28. Shigeori Takenaka, et. al. // Analytical Sciences Vol.13, supplement 1997, P. 303-305.

29. Vardevanyan P .O. et. al. // Experimental and Molecular medicine, Vol. 35, 2003, P. 527-533.

30. Toshihiro Ihara et. al. // Nucleic Acids Research Supplement № 3, 2003, P. 85-86.

31. Sanders K. J., Wiles H., and Rodger A. // The Analyst, Vol. 126, 2001, P. 852-854.

32. Trieb M. et. al. // Nucleic Acids Research, Vol. 32, 2004, P. 4696–4703.

33. Круглова Е.Б. и др. // Биополимеры и клетка 21 (4) , 2005, с. 358-364.
Published
2009-06-05
Cited
How to Cite
MinakovaЕ. А., & KruglovaЕ. B. (2009). Actinocin derivative interaction with DNA molecules at different concentrations of monovalent alkaline metals ions Na+ and K+. Biophysical Bulletin, 2(23), 30-39. Retrieved from https://periodicals.karazin.ua/biophysvisnyk/article/view/4269